ModelSEED Biochemistry
kbase_msd_biochemistry
Philosophy
Enable metabolic modeling and pathway analysis. Map genes to reactions, understand metabolic capabilities, and support flux balance analysis.
Citation & Attribution
Provider: ModelSEED / Henry Lab
Website: https://modelseed.org/
Scale
Schema Browser
reagent
262,517 rows
| Column | Type | Description |
|---|---|---|
reaction_id |
string | FK -> `reaction.id` |
molecule_id |
string | FK -> `molecule.id` |
compartment_index |
int | Cellular compartment (0=cytoplasm) |
stoichiometry |
float | Coefficient (negative=reactant, positive=product) |
Sample Queries
Get reactions
SELECT *
FROM kbase_msd_biochemistry.reaction
LIMIT 20
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