KBase Genomes
kbase_genomes
Philosophy
Provide foundational genome sequence data. Access raw sequences, structural annotations, and protein products for detailed analysis.
Data sources:
KBase genome repository
NCBI
JGI
Citation & Attribution
Provider: KBase, DOE
Website: https://www.kbase.us/
Scale
16
tables
Schema Browser
Tables (6)
contig_collection 293,059 contig 34,582,336 feature 1,011,650,903 encoded_feature 1,011,650,903 protein 253,173,194 name 1,046,526,298
name
1,046,526,298 rows
Cross-reference table mapping between identifier systems. This is essential for linking gene IDs from other databases (e.g., pangenome `gene_id`) to CDM UUIDs used in this database.
| Column | Type | Description |
|---|---|---|
entity_id |
string | CDM UUID (FK to feature, protein, etc.) |
name |
string | External identifier (e.g., gene locus tag) |
description |
string | Name description |
source |
string | Source system for this name |
Sample Queries
Get genome metadata
SELECT *
FROM kbase_genomes.genome
LIMIT 20