KBase Genomes
kbase_genomes
Philosophy
Provide foundational genome sequence data. Access raw sequences, structural annotations, and protein products for detailed analysis.
Data sources:
KBase genome repository
NCBI
JGI
Citation & Attribution
Provider: KBase, DOE
Website: https://www.kbase.us/
Scale
16
tables
Schema Browser
Tables (6)
contig_collection 293,059 contig 34,582,336 feature 1,011,650,903 encoded_feature 1,011,650,903 protein 253,173,194 name 1,046,526,298
encoded_feature
1,011,650,903 rows
CDS-level records (coding sequences).
| Column | Type | Description |
|---|---|---|
encoded_feature_id |
string | **Primary Key**. CDM UUID |
hash |
string | Content hash |
has_stop_codon |
string | Whether CDS has stop codon |
type |
string | Feature type |
Sample Queries
Get genome metadata
SELECT *
FROM kbase_genomes.genome
LIMIT 20