KBase Genomes
kbase_genomes
Philosophy
Provide foundational genome sequence data. Access raw sequences, structural annotations, and protein products for detailed analysis.
Data sources:
KBase genome repository
NCBI
JGI
Citation & Attribution
Provider: KBase, DOE
Website: https://www.kbase.us/
Scale
16
tables
Schema Browser
Tables (6)
contig_collection 293,059 contig 34,582,336 feature 1,011,650,903 encoded_feature 1,011,650,903 protein 253,173,194 name 1,046,526,298
contig_collection
293,059 rows
One record per genome, linking to taxonomy.
| Column | Type | Description |
|---|---|---|
contig_collection_id |
string | **Primary Key**. CDM UUID |
hash |
string | Content hash |
contig_bp |
string | Total base pairs |
ncbi_taxon_id |
string | NCBI taxonomy ID |
gtdb_taxon_id |
string | GTDB taxonomy ID |
Sample Queries
Get genome metadata
SELECT *
FROM kbase_genomes.genome
LIMIT 20