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KBase Genomes

kbase_genomes

Primary

Philosophy

Provide foundational genome sequence data. Access raw sequences, structural annotations, and protein products for detailed analysis.

Data sources: KBase genome repository NCBI JGI

Citation & Attribution

Provider: KBase, DOE

Website: https://www.kbase.us/

Scale

16
tables

Schema Browser

Tables (6)

contig_collection 293,059 contig 34,582,336 feature 1,011,650,903 encoded_feature 1,011,650,903 protein 253,173,194 name 1,046,526,298

Key Tables

Table Description Rows
genome Genome metadata —
contig Contig sequences —
feature Genomic features (genes, CDS, etc.) —
protein Protein sequences —

Sample Queries

Get genome metadata

SELECT *
FROM kbase_genomes.genome
LIMIT 20

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🧬

Pangenome Collection

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Projects Using This Collection

Antibiotic Resistance Hotspots in Microbial Pangenomes

Which microbial species and ecological environments show the highest concentration of antibiotic resistance genes, and c...

Start Exploring

Access the full KBase Genomes data through BERDL JupyterHub.

Open JupyterHub